Pangenome database of Fusarium oxysporum

Pangenome database of Fusarium oxysporum species complex: an open-source database for comparative and functional genomics and pangenome of Fusarium oxysporum. Available data include genomes, functional annotations, effectors, and pangenome graph.

Pangenome

 

Pangenome Analysis

Available Tools

 

JBrowse

Visualize genome annotations, alignments, and variants with JBrowse

BLAST

Align protein or nucleotide sequence(s) to our database with Basic Local Alignment Search Tool

KEGG Enrichment

Analyze KEGG terms enrichment of a gene list

GO Enrichment

Analyze GO terms enrichment of a gene list

Align

Align genomes to Fol4287

Search

 

Batch Search

Extract gene information with a gene ID list

Gene Search by Location

Find genes within a given location

Effector Search

Find effectors and their features in a given gene list

Orthogroup Search

Find orthologs of a given gene in all F. oxysporum genomes

KEGG annotation search

Extract KEGG annotations with a gene ID list

GO annotation search

Extract GO terms annotations with a gene ID list